ProfCom_GO

  • GO term Gene Ontology term (or combination of terms)
  • Description Description of GO term (or combination of terms)
  • l A The number of genes from the input list classified by the GO term (in brackets the size of the input list is reported)
  • l B The total number of genes in the whole geneme classified by the GO term (in brackets the number of annotated genes in the whole genome is given)
  • odds ratio = (l A/size_input_list)/(l B/size_reference_list) The ratio of occurrence for GO term in the input list to the occurrence for GO term in the reference set (i.e. whole genome)
  • p-value The P-value of the enrichment (adjusted for multiple testing by Bonferroni correction or Monte-Carlo simulations)
  • Genes Genes from the input list classified by the GO term (or combination of terms)

GeneSet2MiRNA

  • MicroRNA model Single, pair, triplet or quadruplet of miRNAs
  • l A The number of genes from the input list predicted to be the target of the MicroRNA (in brackets the size of the input list is reported)
  • l B The total number of genes predicted to be the target of the MicroRNA (in brackets the number of annotated genes in the whole genome is given)
  • odds ratio = (l A/size_input_list)/(l B/size_reference_list) The ratio of occurrence for "MicroRNA model" in the input list to the occurrence for "MicroRNA model" in the reference set (i.e. whole genome)
  • p-value The P-value of the enrichment (adjusted for multiple testing by Bonferroni correction or Monte-Carlo simulations)
  • Genes Genes from the input list regulated by the MicroRNA (or combination of MicroRNAs)

ProfCom_PROT_MOTIF

  • Amino Acid Triplet Combination (or a single) of Amino Acid Triplet
  • l A The number of genes from the input list whose proteins have combination (or a single) of the Amino Acid Triplets (in brackets the size of the input list is reported)
  • l B The total number of genes in the whole genome whose proteins have combination (or a single) of Amino Acid Triplets (in brackets the number of genes in the whole genome is given)
  • odds ratio = (l A/size_input_list)/(l B/size_reference_list) The ratio of occurrence for "Amino Acid Triplet" in the input list to the occurrence for "Amino Acid Triplet" in the reference set (i.e. whole genome)
  • p-value The P-value of the enrichment (adjusted for multiple testing by Bonferroni correction)
  • Genes Genes from the input list classified by the presence of Amino Acid Triplet (or combination of Amino Acid Triplets)

ProfCom_InterPro

  • InterPro Motif Combination (or a single) of InterPro Motifs
  • Description Description of the InterPro Motif (or combination of motifs)
  • l A The number of genes from the input list whose proteins have combination (or a single) of the InterPro Motifs (in brackets the size of the input list is reported)
  • l B The total number of genes in the whole genome whose proteins have combination (or a single) of InterPro Motifs (in brackets the number of genes in the whole genome is given)
  • odds ratio = (l A/size_input_list)/(l B/size_reference_list) The ratio of occurrence for "InterPro Motif" in the input list to the occurrence for "InterPro Motif" in the reference set (i.e. whole genome)
  • p-value The P-value of the enrichment (adjusted for multiple testing by Bonferroni correction)
  • Genes Genes from the input list classified by the presence of Amino Acid Triplet (or combination of Amino Acid Triplets)